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Journal: Nucleic Acids Research
Article Title: SPRINT: a Cas13a-based platform for detection of small molecules
doi: 10.1093/nar/gkaa673
Figure Lengend Snippet: SPRINT can be used for compound screens and enzyme-coupled assays. Fluorescent signal of the SPRINT reactions was background subtracted and normalized to 125 nM fluorescein. ( A ) The guanine riboswitch xpt/pbuE *6U regulated transcription in response to 30 different compounds. Signal with solvent only was subtracted from signal with ligand to correct for differences in solvents of ligands. Dots represent mean value, n = 3. ( B ) The effect of the compounds on transcription from a constitutive promoter was measured. Signal with solvent only was subtracted from signal with ligand to correct for differences in solvents of ligands. Dots represent one biological replicate. ( C ) SPRINT measured constitutive transcription of Cas13a target as transcription was inhibited at increasing concentrations of rifampicin. Bars indicate mean value, error bars indicate s.d. from the mean. n = 3. ( D ) Diagram of an enzyme-coupled assay. The enzyme hPNP converts inosine to hypoxanthine, which is detected by the guanine riboswitch xpt/pbuE *6U and triggers the SPRINT signal. ( E ) The enzyme-coupled assay was used to measure enzymatic activity of hPNP. Concentration of inosine was 1 mM, hPNP was added to an activity of 10 mU/μl, concentration of Immucillin-H was 10 μM. Bars indicate mean value, error bars indicate s.d. from the mean. n = 3. p -value was calculated using a two-tailed t -test. ( F ) The enzyme-coupled assay was used to measure concentration-dependent substrate conversion. hPNP was added to an activity of 1 mU/μl. Bars indicate mean value, error bars indicate s.d. from the mean. n = 3.
Article Snippet: Additionally, the following components were added: human purine nucleoside phosphorylase (Sigma-Aldrich, # 540221) was added to 0.01 U/μl, MgHPO 4 was added to 1 mM, in some
Techniques: Solvent, Activity Assay, Concentration Assay, Two Tailed Test